Computing Resources

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Latest News - F.M. Kirby Research Center's Philips Achieva 7T MRI

MR Operations

On-Line Scheduling

Scheduling Manual

Request Scheduling Account

Synamps2 EEG Setup Procedure

Local Resources

fMRI Support

DICOM and Philips REC files

Kirby Center Phone Numbers


Available Software Packages

F.M. Kirby Research Center & Department of Radiology, Johns Hopkins University

CSX DSX Spectroscopy Analysis Software

Laboratory of Anatomical Brain MRI, Johns Hopkins University

MRI Studio Image Processing Software with Diffusion Tensor Calculation and Fiber Tracking

Image Analysis and Communications Lab, Department of Electrical & Computer Engineering, Johns Hopkins University

CATNAP Coregistration, Adjustment, and Tensor-solving, a Nicely Automated Program

Richard Edden, F.M. Kirby Research Center & Cardiff University, Cardiff, Wales, UK

Susceptability Weighted Imaging (SWI) Tool

Wellcome Department of Cognitive Neurology, University College London

Statistical Parametric Mapping (SPM5, SPM2, SPM99, SPM96), SPM WikiBook

Biostatistics Department, University of Michigan

Statistical nonParametric Mapping (SnPM5b, SnPM99) Manual

Laboratoire d'imagerie biomédicale, Ecole Polytechnique Fédérale de Lausanne

Wavlet-based Statistical Parametric Mapping (WSPM) Example Paper

FMRIB, Department of Clinical Neurology, Oxford University

FMRIB Software Library (FSL 3.2) (FSL 3.3) (FSL 4.0.1)

Scientific and Statistical Computing Core, NIMH, NIH 

Analysis of Functional NeuroImages (AFNI) and Surface Mapping with AFNI (SUMA) Online Manuals (2007_05_29_1644) (2006_03_21_1314)
Previous version (AFNI 2.56b)

The MIND Institute, University of New Mexico

Group ICA of fMRI Toolbox (GIFT 1.3d) Manual Walkthrough Help pages

Fusion ICA Toolbox (FIT 2.0a) Manual Help pages

Medical Numerics, Inc. 

MEDx 3.41 - Image Processing Software Package

National Institute of Mental Health, NIH 

Functional Imaging Data Analysis Platform (FIDAP)

Center for Magnetic Resonance Research, University of Minnesota 

Stimulate - fMRI Analysis Software Package

Institute for Biodiagnostics, National Research Council of Canada 

EvIdent 6 - Software for the Detection of Novel and Anticipated Events in Imaging Data Sets Tutorial
EROICA (Exploring Regions of Interest with Cluster Analysis) Manual

Research Services Branch, NIH

ImageJ - Image Processing and Analysis in Java

Imaging Sciences Laboratory, Division of Computational Bioscience, CIT, NIH

MIPAV - Medical Image Processing, Analysis and Visualization

CorTechs and the Martinos Center for Biomedical Imaging, Harvard University

Freesurfer - Brain Surface Reconstruction and fMRI Overlay

National Alliance for Medical Image Computing, (NA-MIC)

3D Slicer - Visualization, Registration, Segmentation, and Quantification Of Medical Data

Laboratory of Neuro Imaging, UCLA

Automated Image Registration (AIR 5.2.5) (AIR 3.08 is also available inside MEDx)

Van Essen Lab, Washington University in St. Louis School of Medicine

Caret Help / Tutorial (Computerized Anatomical Reconstruction and Editing Toolkit) and SureFit (Surface Reconstruction by Filtering and Intensity Transformations)

Learning Research and Development Center, University of Pittsburgh

FISwidgets Functional Imaging Software Widgets

SourceForge EEG/MRI Toolbox for Matlab

MRI Toolbox / EEG Toolbox

Cognition and Brain Sciences Unit

ana4dto3d - Analyze 4D to 3D converter


Psychology Software Tools, Inc.

E-Prime - Paradigm Development Software

Cedrus Corp.

SuperLab 4.0, 2.0, 1.0 - Experiment Generator in Psychology

Neurobehavioral Systems

Presentation 9.0 - Stimulus Delivery and Experimental Control

Arrington Research, Inc.

ViewPoint Eye Tracking Software, ViewPointClient Remote Client

Compumedics Neuroscan, Inc.

Neuroscan Manuals, Polhemus Manual

RSNA & Mallinckrodt ERL, Washington University in St. Louis 

Central Test Node (CTN) - DICOM Demonstration Software

The MathWorks, Inc.

Matlab Release 14, Technical Computing Language

Research Systems, Inc.

IDL 6.2, Interactive Data Language

Sun Microsystems, Inc.

Sun HPC ClusterTools

Sun Studio 1 Enterprise Edition

Sun Java Studio 5

Sun ONE Studio 8

  • C compiler
  • C++ compiler
  • FORTRAN 77 & 90 compilers

Sun ONE Application Server 7

StarOffice 7

Java SDK Java RE Java Control Panel

JavaHelp Users Guide

Javascript

Ruby on Rails

V880 Documentation

Objective Development Software GmbH.

Sharity - An SMB File System for Unix

O'Reilly Books

Perl Reference Library (authorized users only)

  • Perl in a Nutshell
  • Learning Perl
  • Learning Perl on Win32
  • Programming Perl
  • Advanced Perl Programming
  • Perl Cookbook

ZK - Simply Ajax Project

Quickstart Guide
Developer Guide
Developer Reference

Apache Software Foundation

Apache HTTP Server
Practical mod_perl

IBM, Inc.

Cloudscape Java- and SQL-based relational database management system (ORDBMS).

Sleepycat Software

BerkeleyDB Berkeley DB

Hughs Technologies

mSQL mini SQL 2.01 database server

MySQL

mySQL mySQL database server

PostgreSQL

PostgreSQL SQL database server

Neuroimaging Informatics Technology Initiative (NIfTI)

niftilib C, Java, and MATLAB libraries for reading nifti-1 files

Miscellaneous Freeware

Amberfish Text retrieval system

AnimabobAnimating Brick of Bytes

Ant Java build tool<

bakefile Makefile generator<

Boost Portable C++ libraries

doxygen Documentation System

GIMP User manual

GIMP Library reference

Grace Tool to make two-dimensional plots of numerical data

ImageMagick Image tools and libraries

Karma Visualization Toolkit

LessTIF Replacement for OSF/Motif

libxml2 XML C parser and toolkit

neon HTTP/WebDAV client library

Opera Web browser

PGP Pretty Good Privacy encryption/decryption

RealPlayer Streaming audio/video player

Samba SMB/CICS compatible server

teTEX TeX and LaTeX documentation

xdiff v3.4 GUI differences

xmgr XY plotting tool

Other Miscellaneous doc files

UNIX

UNIX Man Pages

Info Pages


SunFile V880 Solaris OS apache logo
Tomcat Tomcat 5 Servlet/JSP Container
openssl logo

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